They can be annoyed all they want. You are correct to complain. I am guessing the wheel well liners and mud flaps were removed because of constraints. Side emblems are an issue and they will be coming.....sometime. Check your order paperwork against your sticker. If any items were removed from the original order, you should have signed new paperwork if that was done. Mine wasn't overly clean when I picked it up either, but I was ok with that as I really didn't want some 18 year old kid who didn't care cleaning my truck. As far as the door ding, chip, and homelink make them fix it. You paid good money for a complete truck.